PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0034900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 272aa    MW: 29630.8 Da    PI: 5.7099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0034900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-061732141055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + RR++iN+++  L++l+P +   + k +    +Le+ ++Y++sLq
  Spipo18G0034900 173 QVRREKINEKMRLLQTLVPGC---Y-KAMGTTVMLEEIINYVRSLQ 214
                      57******************9...3.44888899**********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.80E-9149218No hitNo description
Gene3DG3DSA:4.10.280.103.0E-13153225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.087163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-5169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-12170228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MARHMSMVMA ELAEDFGSFR TLATLMGMDP SFDLIDDFST AIKDPSFHLR SFSDNSFSLP  60
QQLQQFSAPH AETVPWCPPA GCPPGVGLLA DSVVGKEETI SSDGGAVPPS NDRGGEIEAE  120
RKTGPRRGKR RQSWGEEKPA GVVHVRAKRG QATDRHSLAE RKTAQSLGSL TTQVRREKIN  180
EKMRLLQTLV PGCYKAMGTT VMLEEIINYV RSLQNQVEFL SMKLSAAAAF CDLTPSEVDL  240
AAAVMSRLPP LVGDGADCQI QEMDGLMIRE Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.15e-39bHLH family protein